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SeqOne

Bioinformatics Engineer - Oncology & Hematology (H/F)

Posted a month ago
€32000 - €48000 per year
2-5 years experience
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AI Summary

Design, build, and operate production-grade bioinformatics applications and pipelines for complex biological data. Collaborate with research teams to translate scientific needs into scalable software while leading code quality and CI/CD efforts.

About SeqOne

SeqOne develops next-generation genomics software that turns complex sequencing data into clear, actionable insights for clinicians and researchers. Our platforms power high-impact applications in oncology and rare disease, with a strong focus on robustness, reproducibility, and speed. We are building a world-class team in Montpellier (FR), Paris (FR), and Cambridge (UK).

Why SeqOne?

  • Direct Impact: Your contributions will enhance customer experience and shape the evolution of our genomic products.
  • Stimulating Environment: Passionate team, innovative projects, and a culture of transparency.
  • Flexibility: Remote work options, flexible hours, and competitive benefits.
  • Growth Opportunities: Internal career development, continuous training, and participation in scientific conferences.
  • Soft Skills: "Unstoppable Positivity" (resilience and solution-first mindset) and "Open Heart, Hands-On" (kindness combined with direct feedback).

Tasks

As a Bioinformatics Engineer, you will design, build, and operate production-
grade bioinformatics applications and pipelines. You will partner with research and product teams to translate scientific needs into reliable software, lead code quality efforts (reviews, testing, CI/CD) and help the team adopt best practices so that complex analyses become routine, reproducible and scalable.

  • Design and develop tools and pipelines for complex biological data.
  • Maintain and improve existing applications while troubleshooting and resolving user issues.
  • Optimize performance and reliability, ensuring reproducible and robust results.
  • Collaborate closely with scientific teams and contribute to publications and presentations.
  • Lead code reviews, enforce coding standards and secure practices.
  • Track new methods/technologies and integrate them when relevant.
  • Share knowledge through documentation creation, training and guidance for both users and teammates.

Requirements

  • We are seeking candidates with a Master’s degree (Bac+5) in Bioinformatics, CS or a related field and at least 2 years of experience in bioinformatics development.
  • Strong proficiency in Python, UNIX/Linux, and Bash is required.
  • Experience with Workflow managers (Snakemake, Nextflow).
  • Familiarity with Git (branching, PRs, code reviews) as well as Docker for creating reproducible environnements is essential.
  • Candidates should demonstrate clear communication skills, the ability to effectively in a team, autonomy in managing tasks and strong analytical problem-solving abilities.

Nice to have

  • A PhD or equivalent research experience is a plus.
  • Experience with CI/CD pipelines (GitLab CI, GitHub Actions) is advantageous.
  • Knowledge of environment managers such as pyenv, poetry or virtual environments, as well as experience with HPC or Cloud (SLURM, AWS/GCP/Azure) is a strong asset.
  • Proficiency in additional programming languages sur as R, Perl, Groovy, Nim or Rust is welcomed.

Benefits

Bases in Montpellier / Paris or Cambridge
Fixed salary, bonus, free health insurance
This position offers flexible working arrangements, including hybrid, on-site, or full remote options

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